Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVSSLLVLGITITLQTVVEAKGPKVAYTQEGMTALSDTNKDKVTTISIDEIQKSLEGKKPITVSFDIDDTLLFSSQYFQYGKEYVTPGSFDFLHKQKFWDLVAKRGDQDSIPKEYAKKLIAMHQKRGDKIVFITGRTRGSMYKEGEVDKTAKALAKDFKLDKPIA----VNYTGDKPKKPYKYDKSYYIKKYGSDIHYGDSDDDIHAAREAGARPIRILRAPNSTNLPLPEAGGYGEEVLENSAY
1Z5U Chain:D ((23-214))
----------------------------------------------VHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVTGRS------QTKTETVSKTLADNFHI--PAANMNPVIFAGDKPEQNTKVQ---WLQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTYKPLPQAGAFGEEVIVNSEY
General information:
TITO was launched using:
RESULT:
Template:
1Z5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22876 for 1507 contacts (-15.2/contact) +
2D Compatibility (PS) -20579 + (NN) -11926 + (LL) 4108
1D Compatibility (HY) -14000 + (ID) 4600
Total energy: -69873.0 ( -46.37 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1Z5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z5U-query.scw
PDB file :
Tito_Scwrl_1Z5U.pdb
: