Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVYENKEELKKEISKTFEKYIMEFNNIPENLKDKRIDEVDRTPAENLSYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSIYAMIDLLSEEELFEAHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
4N6C Chain:B ((12-183))
LRTYENKEELKAEIEKTFEKYILEFDNIPENLKDKRADEVDRTPAENLAYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSISAMIDSLSEEELFEPHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
General information:
TITO was launched using:
RESULT:
Template:
4N6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24117 for 1274 contacts (-18.9/contact) +
2D Compatibility (PS) -17792 + (NN) -4628 + (LL) 0
1D Compatibility (HY) -21200 + (ID) 8050
Total energy: -75787.0 ( -59.49 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4N6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6C-query.scw
PDB file :
Tito_Scwrl_4N6C.pdb
: