Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFELKNIAYRYKGNDN--KTLENINYSFQSGVFYTILGNSDSGKTTLLSLMAGLDSPTEGQVLFNK---KDIKEAGYAQHRKKNIALVFQNYNLLDYLTPLENVQLVKPTADK---------------QLLLDLGLKEDMLTRNILRLSGGQQQRVAIARALVAGTPAILLDEPTGNLDFDIARDITMRLKDFAHKEKRCVIMVTHSREIAHMADTALQLTGDNLKELSKESIAQSILQQRNL
1L2T Chain:B ((1-218))
MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF---------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132891 for 1606 contacts (-82.7/contact) +
2D Compatibility (PS) -21737 + (NN) -11507 + (LL) 472
1D Compatibility (HY) -17600 + (ID) 3950
Total energy: -187213.0 ( -116.57 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: