Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MIKNSTLTKLTRVAILSALCVVL----RYAFAPLPNIQPITAIFLITVVLFDLKEGVATVT-ITMLVSSFLMG-FGPWVFLQIISFTLILCLWKFLIYPLTKA-VCFGKITEVVLQTFFAGGLGVVYGVIIDTCFAWLYHMPWWTYVLAGLS-FNMAHALST-CLFYPLLLPILRRFRNEKIH
1VK9 Chain:A ((2-148))
GSDKIHHHHHHVEKNLLRSALKIFEKKDLSLLAYSGRSIFESKDSGLKPVVELFKR---FDNLEGSLVIDKMVGKAAASFLLKMKPDHIHAKVIS------------KPALKLMNEYGQSFSYDEKIPFVLGKD-------------------------GKSMCPFEKLVLEMDDPEEIIRIVLSKF------
General information:
TITO was launched using:
RESULT:
Template:
1VK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164271 for 954 contacts (-172.2/contact) +
2D Compatibility (PS) -13218 + (NN) 998 + (LL) 5292
1D Compatibility (HY) 800 + (ID) 950
Total energy: -171349.0 ( -179.61 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_1VK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK9-query.scw
PDB file :
Tito_Scwrl_1VK9.pdb
: