Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKTQALIEQYSKSLVEVAIEHKIVEKIQQEVAALIDIFETS-ELEGVLSSLAVSHDEKQHFVKTLQT-SCSTYLVNFLEVIVQNEREALLYPILKSVDQELIKVNGQYPIQITTAVALSPEQKERLFDIAKTKLALPNGQLVEHIDPSIVGGFVVNANNKVIDASVRNQLHQFKMKLK
1ABV Chain:A ((3-105))
----FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTK-NEQMAELLSGALAP-ETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEAT-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ABV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60323 for 768 contacts (-78.5/contact) +
2D Compatibility (PS) -10504 + (NN) -3835 + (LL) 5728
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -71784.0 ( -93.47 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_1ABV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ABV-query.scw
PDB file :
Tito_Scwrl_1ABV.pdb
: