Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESV-QEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
1YV9 Chain:B ((3-257))
LDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWTFEG-
General information:
TITO was launched using:
RESULT:
Template:
1YV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170941 for 2180 contacts (-78.4/contact) +
2D Compatibility (PS) -28195 + (NN) -17329 + (LL) 104
1D Compatibility (HY) -27200 + (ID) 7750
Total energy: -251311.0 ( -115.28 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1YV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YV9-query.scw
PDB file :
Tito_Scwrl_1YV9.pdb
: