Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKKLHGFFNFVRWLLVVLLIIVGLALVFNKPIRNAFIAHQSNHYQISRVSKKTIEKNKKSKTSYDFSSVKSISTESILSAQTKSHNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGQNNYALASHHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPEATERIIVHAELEKTGEFSTADESILKAFSKKYNQINL
3RCC Chain:R ((10-147))
---------------------------------------------------------------------------------------HNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGPNNYALASHHVF--------LFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTD-----RIIVHAELEKTG----------------------
General information:
TITO was launched using:
RESULT:
Template:
3RCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77035 for 901 contacts (-85.5/contact) +
2D Compatibility (PS) -13593 + (NN) -4119 + (LL) 9020
1D Compatibility (HY) -17600 + (ID) 6200
Total energy: -109527.0 ( -121.56 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3RCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCC-query.scw
PDB file :
Tito_Scwrl_3RCC.pdb
: