Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSMDWETFLDPYIQTVGELKIKLRGIRKQFRKQNRHSPIEFVTGRVKSVESIQEKMVLRGISEENLAQDLQDIAGLRIMVQFVDDVDEVLALLRKRHDMTVVQERDYITHMKSSGYRSYHVVVEYPVDTIDGQKKVLAEIQIRTLAMNFWATIEHSLNYKYQGDFPEEIKQRLEKTAKIALELDEEMRKIREDIREAQLLFDPLNRKLSDGVGNSDDTDEFYR |
4PNB Chain:A ((2-31)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------GEIAQSIKEIAKSIKEIAWSIKEIAQSIKG--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PNB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2339 for 114 contacts (-20.5/contact) +
2D Compatibility (PS) -3495 + (NN) -3753 + (LL) 14624
1D Compatibility (HY) -1600 + (ID) 400
Total energy: 3037.0 ( 26.64 by residue)
QMean score : 0.666
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