Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
4GMK Chain:B ((5-226))
-DELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLGQFPLPVEVIPYGSGTVFKRFEEKGLNPEFRKNEDGSLLHTDSDNYIIDLHLGKIENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEVLEA
General information:
TITO was launched using:
RESULT:
Template:
4GMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112371 for 1862 contacts (-60.3/contact) +
2D Compatibility (PS) -24198 + (NN) -10038 + (LL) 208
1D Compatibility (HY) -24800 + (ID) 6450
Total energy: -177649.0 ( -95.41 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_4GMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMK-query.scw
PDB file :
Tito_Scwrl_4GMK.pdb
: