Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFYNIDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKYYEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
1SVW Chain:B ((1-189))
-----MKVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGF------EREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI
General information:
TITO was launched using:
RESULT:
Template:
1SVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89096 for 1453 contacts (-61.3/contact) +
2D Compatibility (PS) -19321 + (NN) -4174 + (LL) 1180
1D Compatibility (HY) -21200 + (ID) 5650
Total energy: -138261.0 ( -95.16 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1SVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVW-query.scw
PDB file :
Tito_Scwrl_1SVW.pdb
: