Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVEVDTTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS
4P81 Chain:D ((8-179))
-----VLDEQAIRRALTRIAHEIIERNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKKVPVGELDITLYRD------KGTDIPVDITDKKVILVDDVLYTGRTVRAAMDALMDLGRPSQIQLAVLVDRGHRELPIRADYVGKNVPTSKSERIVVQLSEVDGQDRVSIYEK-
General information:
TITO was launched using:
RESULT:
Template:
4P81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110271 for 1291 contacts (-85.4/contact) +
2D Compatibility (PS) -17439 + (NN) -5205 + (LL) 1084
1D Compatibility (HY) -19200 + (ID) 5150
Total energy: -156181.0 ( -120.98 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_4P81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P81-query.scw
PDB file :
Tito_Scwrl_4P81.pdb
: