Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE
3NWY Chain:F ((50-281))
----YSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAK-AVDGVFAED-------ELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT----
General information:
TITO was launched using:
RESULT:
Template:
3NWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175698 for 1898 contacts (-92.6/contact) +
2D Compatibility (PS) -24547 + (NN) -11289 + (LL) 388
1D Compatibility (HY) -23600 + (ID) 6200
Total energy: -240946.0 ( -126.95 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3NWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWY-query.scw
PDB file :
Tito_Scwrl_3NWY.pdb
: