Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVRLAFPNEIDQIMLLIEEARAEIAKTGSDQWQKEDGY--PNRNDIIDDILNGYAWVGI-EDGMLATYAAVIDGHEEVYDAIYEGKWLH-DNHRYLTFHRIAISNQFRGRGLAQTFLQGLIE---GHKGPDFRCDTHEKNVTMQHILNKLGYQYCGKVPLDGVRLAYQKIKEKGETSIYREIDERNPM
2OH1 Chain:A ((14-177))
FLVRFAAPTDRLKINDLMIDTARWLKESGSTQWS--DILHGFDVHNIEQRIELGEVALFETEAGALAGAMIIRKTPS-DWD---TDLWEDLAIDKAYYLHRIMVSRAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIESNETLNQMYVRYGFQFSGKKN---GFYLYQKELSQK--------------
General information:
TITO was launched using:
RESULT:
Template:
2OH1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62163 for 1095 contacts (-56.8/contact) +
2D Compatibility (PS) -17422 + (NN) -10596 + (LL) 1412
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -95569.0 ( -87.28 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_2OH1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OH1-query.scw
PDB file :
Tito_Scwrl_2OH1.pdb
: