Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ
4EAQ Chain:B ((28-223))
-----FITFEGPEGSGKTTVINEVYHRLVKDY--DVIMTREPGGVPTGEEIRKIVLE--GNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN-------LDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK
General information:
TITO was launched using:
RESULT:
Template:
4EAQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75151 for 1522 contacts (-49.4/contact) +
2D Compatibility (PS) -21228 + (NN) -14699 + (LL) 1416
1D Compatibility (HY) -19200 + (ID) 4650
Total energy: -133512.0 ( -87.72 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_4EAQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EAQ-query.scw
PDB file :
Tito_Scwrl_4EAQ.pdb
: