Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDP-DLKKWGNNIWHGLVGIYKIQEDL-AI-KDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
3CCG Chain:A ((3-188))
--------WSYDKITDYLMNNLGEKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAKK-VIGIDD-EDVLNAIEFHTTGRPNMSLLEKIIYIADYIEPGREFKGVDELRKAADEDLNKALLMSFDNTIKFVIDKGGFLHHNTIEARNYLISRK-
General information:
TITO was launched using:
RESULT:
Template:
3CCG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82821 for 1450 contacts (-57.1/contact) +
2D Compatibility (PS) -19609 + (NN) -8513 + (LL) 336
1D Compatibility (HY) -13200 + (ID) 3250
Total energy: -127057.0 ( -87.63 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3CCG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CCG-query.scw
PDB file :
Tito_Scwrl_3CCG.pdb
: