Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTRNYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDDLPF
3VDY Chain:B ((4-108))
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR--------NVYVTEVLADTVRFMDP----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52334 for 617 contacts (-84.8/contact) +
2D Compatibility (PS) -10746 + (NN) -5496 + (LL) -420
1D Compatibility (HY) -12000 + (ID) 2800
Total energy: -83796.0 ( -135.81 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3VDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDY-query.scw
PDB file :
Tito_Scwrl_3VDY.pdb
: