Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIALINENSQASKNTIIYKELKAVSDEKGFEVFNYGMYGKEEESQLTYVQNGLLTAILLNSGAADFVITGCGTGIGAMLACNSFPGVVCGFAADPVDAYLFSQVNGGNALSLPFAKGFGWGAELNLRYLFERLFEDEKGGGYPKERAVPEQRNARILSEIKQITYRDLLSVLKEIDQDFLKETISGEHFQEYFFANCQNQNIADYLKSVLD
4U8F Chain:B ((1-212))
MKIALINENSQASKNTIIYKELKAVSDEKGFEVFNYGMYGKEEESQLTYVQNGLLTAILLNSGAADFVITGCGAGIGAMLACNSFPGVVCGFAADPVDAYLFSQVNGGNALSLPFAKGFGWGAELNLRYLFERLFEDEKGGGYPKERAVPEQRNARILSEIKQITYRDLLSVLKEIDQDFLKETISGEHFQEYFFANCQNQNIADYLKSVLD
General information:
TITO was launched using:
RESULT:
Template:
4U8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129674 for 1774 contacts (-73.1/contact) +
2D Compatibility (PS) -23567 + (NN) -16234 + (LL) 0
1D Compatibility (HY) -31200 + (ID) 10550
Total energy: -211225.0 ( -119.07 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_4U8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U8F-query.scw
PDB file :
Tito_Scwrl_4U8F.pdb
: