Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
4Q9O Chain:B ((12-240))
--------------Q-VPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRH------
General information:
TITO was launched using:
RESULT:
Template:
4Q9O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108929 for 1857 contacts (-58.7/contact) +
2D Compatibility (PS) -24849 + (NN) -12939 + (LL) 2016
1D Compatibility (HY) -28000 + (ID) 8150
Total energy: -180851.0 ( -97.39 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9O-query.scw
PDB file :
Tito_Scwrl_4Q9O.pdb
: