Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRGGMGNMQKMMKQMQKMQKDMAKAQEELAEKVVEGTAGGGMVTVKANGQKEILDVIIKEE--VVD-PEDIDMLQ----DLVLAATNEALKKVDEITNETMGQFTKGMNMPGLF
1YBX Chain:A ((43-133))
--------------INNLVKQAQKMQRDMERVQEELKE----KTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKIT-----
General information:
TITO was launched using:
RESULT:
Template:
1YBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6289 for 492 contacts (12.8/contact) +
2D Compatibility (PS) -9007 + (NN) -4058 + (LL) 808
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -7668.0 ( -15.59 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1YBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBX-query.scw
PDB file :
Tito_Scwrl_1YBX.pdb
: