Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
3VDP Chain:D ((17-212))--YSTSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV


General information:
TITO was launched using:
RESULT:

Template: 3VDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131535 for 1281 contacts (-102.7/contact) +
2D Compatibility (PS) -21685 + (NN) -18599 + (LL) 328
1D Compatibility (HY) -24400 + (ID) 6300
Total energy: -202191.0 ( -157.84 by residue)
QMean score : 0.569

(partial model without unconserved sides chains):
PDB file : Tito_3VDP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VDP-query.scw
PDB file : Tito_Scwrl_3VDP.pdb: