Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDT---DLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
1YIX Chain:B ((2-257))
FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQND--PYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHID
General information:
TITO was launched using:
RESULT:
Template:
1YIX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149879 for 2252 contacts (-66.6/contact) +
2D Compatibility (PS) -27386 + (NN) -13815 + (LL) 260
1D Compatibility (HY) -21200 + (ID) 5100
Total energy: -217120.0 ( -96.41 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1YIX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIX-query.scw
PDB file :
Tito_Scwrl_1YIX.pdb
: