Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
1QD9 Chain:C ((1-124))
-TKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
General information:
TITO was launched using:
RESULT:
Template:
1QD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68569 for 960 contacts (-71.4/contact) +
2D Compatibility (PS) -13543 + (NN) -5233 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 6200
Total energy: -110537.0 ( -115.14 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_1QD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QD9-query.scw
PDB file :
Tito_Scwrl_1QD9.pdb
: