Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIA--EAEQTGAAILAVPVKDTIKRVQDLQ--VSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
3N9W Chain:B ((10-223))
-----VVPAAG----------KQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHP---QITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYC-GFHPQLVEGRADNIKVTRPEDLALAE------------
General information:
TITO was launched using:
RESULT:
Template:
3N9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93867 for 1577 contacts (-59.5/contact) +
2D Compatibility (PS) -21314 + (NN) -9861 + (LL) 2072
1D Compatibility (HY) -11600 + (ID) 3850
Total energy: -138420.0 ( -87.77 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3N9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N9W-query.scw
PDB file :
Tito_Scwrl_3N9W.pdb
: