Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKITLACKTCGNRNYTTMKSSASAAERLEVKKYCSTCNSHTAHLETK
1VK6 Chain:A ((105-120))
------------------------------RSHKYCGYCGHEMYPS---
General information:
TITO was launched using:
RESULT:
Template:
1VK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -781 for 50 contacts (-15.6/contact) +
2D Compatibility (PS) -1589 + (NN) 752 + (LL) 2424
1D Compatibility (HY) -400 + (ID) 200
Total energy: 206.0 ( 4.12 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_1VK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK6-query.scw
PDB file :
Tito_Scwrl_1VK6.pdb
: