Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFALLDTGISQLIRLIVE
4C48 Chain:C ((3-35))
-----------------------ELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNI---
General information:
TITO was launched using:
RESULT:
Template:
4C48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9789 for 130 contacts (-75.3/contact) +
2D Compatibility (PS) -3211 + (NN) 886 + (LL) 2196
1D Compatibility (HY) -3600 + (ID) 250
Total energy: -13768.0 ( -105.91 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_4C48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C48-query.scw
PDB file :
Tito_Scwrl_4C48.pdb
: