Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDPRDVLKRPVITERSADLMTEK-KYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA-
1JJ2 Chain:R ((1-81))
---SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-------------KKAVVRLSEDDDAQEVASRI
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17567 for 546 contacts (-32.2/contact) +
2D Compatibility (PS) -8345 + (NN) 590 + (LL) 884
1D Compatibility (HY) -3200 + (ID) 1550
Total energy: -29188.0 ( -53.46 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: