Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNN-------ERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW
5BR8 Chain:H ((1-138))
-MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW
General information:
TITO was launched using:
RESULT:
Template:
5BR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80061 for 958 contacts (-83.6/contact) +
2D Compatibility (PS) -14118 + (NN) -2816 + (LL) 208
1D Compatibility (HY) -13600 + (ID) 3750
Total energy: -114137.0 ( -119.14 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_5BR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BR8-query.scw
PDB file :
Tito_Scwrl_5BR8.pdb
: