Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPS-EGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPKRGF-TNINRKEYAVVNLDKLNGFAEGTEVTPELLLETGVISKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI
5GAE Chain:M ((1-144))
MRLNTLSPAEG-SKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTS-RKAAITAEIRLSDLAKV-EGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE-
General information:
TITO was launched using:
RESULT:
Template:
5GAE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14206 for 780 contacts (-18.2/contact) +
2D Compatibility (PS) -15547 + (NN) -5918 + (LL) 96
1D Compatibility (HY) -7600 + (ID) 3250
Total energy: -46425.0 ( -59.52 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_5GAE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAE-query.scw
PDB file :
Tito_Scwrl_5GAE.pdb
: