Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
M--IGQKAWVNIGKTEFILL----LVVGILTIINVLTADGEKRTF-------------HSPKKKNINHLTLYDCVSPEVQNSINETGRVTNFF------------
2MI2 Chain:A ((1-104))
MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTN-LTPELKASMDELRQAAESMKRSYVANDPLEH
General information:
TITO was launched using:
RESULT:
Template:
2MI2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3652 for 304 contacts (-12.0/contact) +
2D Compatibility (PS) -6952 + (NN) 3743 + (LL) 56
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -12755.0 ( -41.96 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_2MI2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MI2-query.scw
PDB file :
Tito_Scwrl_2MI2.pdb
: