Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDISLTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQFNKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVGDLIANSDAKSAEVK
4M1B Chain:B ((47-246))
----------------------------------------------KVIYKGDTSKKQVAFTFDISWGDKKAIPILDTLKERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQIKLLRPPSGDFNKATLKIAESLGYTVVHWSNNSNDWKNPGVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVSQLISNT--------
General information:
TITO was launched using:
RESULT:
Template:
4M1B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91904 for 1712 contacts (-53.7/contact) +
2D Compatibility (PS) -21867 + (NN) -12788 + (LL) 5156
1D Compatibility (HY) -22800 + (ID) 6100
Total energy: -150303.0 ( -87.79 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_4M1B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1B-query.scw
PDB file :
Tito_Scwrl_4M1B.pdb
: