Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSLIHFDPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGITRNYLASPSIMGVSDGSAFIITLCMVLLPQSSSIEMMIYSFIGSALGAVLVFGLAAMMPNGFTPVQLAIIGTVTSMLLSSLSAAMSIYFQISQDLSFWYSARLHQMSPDFLKLAAPFFLIGIIMAISLSKKVTAVSLGDDISKSLGQKKKTIKIMAMLSVIILTGSAVALAGKIAFVGLVVPHITRFLVGSDYSRLIPCSCILGGIFLTLCDLASRFINYPFETPIEVVT----SIIGVPFFLYLIKRKGGEQNG--- |
2L5A Chain:A ((1-225)) | LISKI---------PFARLVKEVTD------------------EFTTKDQDLR--WQ--------SMAIMALQEASEAYLVGLLEHT--------------------NLLALHAKRITIM---------------KKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTG---------------------EIVEDNGHIKTLTANNSTKDKRTK-----------------YTSVLRDIIDISDEEDGDKGGVKR------ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2L5A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151007 for 1640 contacts (-92.1/contact) +
2D Compatibility (PS) -22170 + (NN) -538 + (LL) 10872
1D Compatibility (HY) -800 + (ID) 1700
Total energy: -165343.0 ( -100.82 by residue)
QMean score : 0.233
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