Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSLPKEVLSQALGIQDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIG-----PLGEQLILHHFL
2CNT Chain:A ((2-144))
----NTISILSTTDLPAAWQIEQRAHAFPWSE---KTFFGN-QGERYLNLKLTADDRMAAFAITQVV-L---------DEATLFNIAVDPDFQRRGLGRMLLEHLIDELETR--GVVTLWLEVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIMAL--
General information:
TITO was launched using:
RESULT:
Template:
2CNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106419 for 1004 contacts (-106.0/contact) +
2D Compatibility (PS) -14873 + (NN) -3495 + (LL) 1052
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -126385.0 ( -125.88 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_2CNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNT-query.scw
PDB file :
Tito_Scwrl_2CNT.pdb
: