Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
4LUP Chain:C ((11-80))
--------VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVN------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46766 for 434 contacts (-107.8/contact) +
2D Compatibility (PS) -7516 + (NN) -2095 + (LL) 10180
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -54597.0 ( -125.80 by residue)
QMean score : 0.769
(partial model without unconserved sides chains):
PDB file :
Tito_4LUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LUP-query.scw
PDB file :
Tito_Scwrl_4LUP.pdb
: