Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGIVVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSGTPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLINIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLTIIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG
4RV7 Chain:D ((20-174))
----------------------------------------------------------------------------------------------------YGSRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKILLKELVT------------------
General information:
TITO was launched using:
RESULT:
Template:
4RV7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122967 for 1236 contacts (-99.5/contact) +
2D Compatibility (PS) -16757 + (NN) -6768 + (LL) 11004
1D Compatibility (HY) -18000 + (ID) 5350
Total energy: -158838.0 ( -128.51 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_4RV7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV7-query.scw
PDB file :
Tito_Scwrl_4RV7.pdb
: