Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGKDAIPVLVEALKEEGSLCNIAAA-VLGEFGEDASEAAEELSCLLKSHAEDTRMAAAISLMRIGKPSLPFVIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
3LTM Chain:B ((113-171))
------------------------------------AVEPLIKALKDEDWFVRIAAAFALGEIGDE--RAVEPLIKALKDEDGWVRQSAADALGEIG---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22146 for 415 contacts (-53.4/contact) +
2D Compatibility (PS) -6229 + (NN) -4272 + (LL) 7436
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -28861.0 ( -69.54 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_3LTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LTM-query.scw
PDB file :
Tito_Scwrl_3LTM.pdb
: