Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQS-QNDFTFPSDTYLLLYFWSMSCPNCHQLTDKVL---QDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
4NMU Chain:A ((11-144))
--IGKEAPNFV--VTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIALDADET-----DIAVKNFVNQYGLKFPVAIDKGQKIIGTYGVGPLPTSFLIDKDGKVVEQIIGEQTKEQLEGYLKK-
General information:
TITO was launched using:
RESULT:
Template:
4NMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128320 for 966 contacts (-132.8/contact) +
2D Compatibility (PS) -13490 + (NN) -3882 + (LL) 672
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -150870.0 ( -156.18 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4NMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NMU-query.scw
PDB file :
Tito_Scwrl_4NMU.pdb
: