Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGRLVFNYRKAMREPKKIQQLTENYSLPFAVELIPAINYFIFVGLCFGFWYGVRMIFPHAFDNSYVIVIFGI-PFFLTMLVTKIK---------PEGKNIYIYFFDF-AKYYFFIKLPQKKYCNDRKIDLSNEKQIEFRKLVKVVDYSNETKNAYEGNTQEFA--VNKNGRRVGVLPNKKQFDSYAK
1DD5 Chain:A ((2-185))VNPFIKEAKEKMK--RTLEKIEDELRKMRTGKPSPAILEEIKVDY-YGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF


General information:
TITO was launched using:
RESULT:

Template: 1DD5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 591 -69284 -117.23 -405.17
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -117.23
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.194

(partial model without unconserved sides chains):
PDB file : Tito_1DD5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1DD5-query.scw
PDB file : Tito_Scwrl_1DD5.pdb: