Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKKLLAFALCTGAYAALFAYSVNSEQKTATSEMTDVSRLMPVKIKQTVKGQEEEMLIDTVKEANRKNIKISIAGAQHSMGGHTYY-EDGIVLDMTGYNKILSLDQEKKTIRVQSGATWNDIQKYVNPYGLAVKVMQSQNIFTIGGSLSANAHGRDIRYGSLIDTVKSFRLLKADGMIITVTPKDDLFTAVIGGYGLFGVILDVTLELTDDELYVMK-TEKMNYSTYSD-YFSKHVKGNPDVRMHLARI-STAKKGFLKDMYVTNYVLANHQDQLSSYSELKEDEYTGATKFALGLSRRYEWGRNWLWDTQQSYFLSQNGTEISRNNVMRSESKFLEYENNDNTDVLQEYFVPVKEYGSYIDDLRQTLSDEDLNLLNITIRYVQKNEKADLSYAKDDMFSLVLLINEGFSKEDQADTARIIRRMTDVAIKHGGSYYLPYMTYQTKAQMRQAYPKSEAFFQKKRTYDPDERFMNYFYQRYK
2VFR Chain:A ((12-420))-----------------------------------NWAGNITYTAKELLRPHSLDALRALVAD----SARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGSGVGNGSLASVVREVELVTADGSTVVIARGDERFGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFTELPLAGLDPATFETVMAAAYS----VSLFTDWRAP-GF-RQ-VWLKRRTDRPLD--GFPY---AAP--AAEKMHP-VPGMPAVNCTE-Q--FGVPGPWH-------ERLPHFRAE--FTPSSGAELQSEYLMPREHALAALHAMDAIRETLAPVLQTCEIRTVAAD-AQWLSPAYG-RDTVAAHFTW-V-E-DTAAVLPVVRRLEEALVPFAARPHWGKVFTVPAGELRALYPRLADFGALAGALDPAGKFTNAFVRGVL


General information:
TITO was launched using:
RESULT:

Template: 2VFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2427 -204094 -84.09 -503.93
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -84.09
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.370

(partial model without unconserved sides chains):
PDB file : Tito_2VFR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VFR-query.scw
PDB file : Tito_Scwrl_2VFR.pdb: