Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKYGIVLFPSKK-LQDLANSYRKRYD-----PSYSLIPP---HLTLRASFECAEEKAD-------QLVSHLRNIAKESHPLVLKMTKYSSFAPVNNVIYIKAEPT---EELKTLNEKLYTGVLA--G--EQEYNFVPHVTVGQNLSDDEH---------SDVLGQLKMQEVSHEEIVDRFHLLYQLE----NGSWTVYETFLLGRGE
3J4Q Chain:A ((90-291))PNYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEIL-EGKHLTLPFHGIGTFQG--QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTFMKLSKAPMLWKKGVRKIEPGLYEQFIDHR-FGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK-


General information:
TITO was launched using:
RESULT:

Template: 3J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 701 -107383 -153.19 -646.89
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -153.19
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.465

(partial model without unconserved sides chains):
PDB file : Tito_3J4Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3J4Q-query.scw
PDB file : Tito_Scwrl_3J4Q.pdb: