Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEKKAVIITGGSSGMGKAMAKKQAELGWHVMVTGRNHEALEETKKEIQTFEG-QVACFQMDVRSDSAASDMIKEAVKAFGRLDALINNAAGNFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARHWIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFLLSDEASYINGDCITMDGGQWLNPYPF
1W6U Chain:D ((47-270))-----------------------SSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG-KYGMRFNVIQPGPIKT------------FEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGE-------


General information:
TITO was launched using:
RESULT:

Template: 1W6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 942 -104363 -110.79 -494.61
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain D : 0.79

3D Compatibility (PKB) : -110.79
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.427

(partial model without unconserved sides chains):
PDB file : Tito_1W6U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1W6U-query.scw
PDB file : Tito_Scwrl_1W6U.pdb: