Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEIKGINHLLFSVSHLDTSIDFYQKVFGAKLLVKGRTTAYFDMNGIWLALNEEPDIPRNDIKLSYTHIAFTIEDHEFEEMSAKLKRLHVNILPGRERDERDRKSIYFTDPDGHKFEFHTGTLQDRLRYYKQEKTHMHFYDETAF
4JD1 Chain:B ((1-139))MMLQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEEDIPRNEIKQSYTHMAFTVTNEALDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEFHTGTLQNRLEYYKEDKKHMTFY-----


General information:
TITO was launched using:
RESULT:

Template: 4JD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 488 -52051 -106.66 -374.47
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.90

3D Compatibility (PKB) : -106.66
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.90
QMean score : 0.606

(partial model without unconserved sides chains):
PDB file : Tito_4JD1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JD1-query.scw
PDB file : Tito_Scwrl_4JD1.pdb: