Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MWRNASMNHSKRNDANDFDSMDEWLRQFFEDPFAWYDETLP-IDLYETSQQYIIEADLTFLQPTQVTVTLSGCEFILTV-----------------KSSGQTFEKQMMLPFYFNDKNIQVECENQILTVAVNKETEDGSSFSLQFPLS
1GME Chain:A ((2-151))SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG


General information:
TITO was launched using:
RESULT:

Template: 1GME.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 380 30659 80.68 235.83
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : 80.68
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.445

(partial model without unconserved sides chains):
PDB file : Tito_1GME.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GME-query.scw
PDB file : Tito_Scwrl_1GME.pdb: