Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTGELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKEDTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGRLKAICTEELEHGGRKMEFQYDGIFYEVLESLGEMPLPPYIKEQLDDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSSLIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII
1VKY Chain:A ((16-347))---SEFDYELPPELIAQEPVEPRDASRLMVLHRKTQRIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK----ASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDED-LSAVCLGRGEDGTRILKFQ---------------------------PQDDRLIFEK-------GTAGLHFTPELIEKLKKKGVQFAEVVLHV------------------HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIA--RLPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL


General information:
TITO was launched using:
RESULT:

Template: 1VKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1466 -206704 -141.00 -738.23
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : -141.00
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_1VKY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VKY-query.scw
PDB file : Tito_Scwrl_1VKY.pdb: