Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MIYPYKEHKPDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNKTLLIEDDATIGHQVTLHSAVIRKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPGHLAFGRPAKVIRPLTEEDRKDMQRIRSEYVEKGQYYKFLQQT 3VNP Chain:C ((2-171)) MIYPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSPNNPLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALGRPAKVVRELTEDDIREMERIRREYVEKGQYYKALQQ-

General information: TITO was launched using: RESULT: Template: 3VNP.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1001 -116013 -115.90 -682.43 target 2D structure prediction score : 0.46 Monomeric hydrophicity matching model chain C : 0.92 3D Compatibility (PKB) : -115.90 2D Compatibility (Sec. Struct. Predict.) : 0.46 1D Compatibility (Hydrophobicity) : 0.92 QMean score : 0.571

(partial model without unconserved sides chains): PDB file : Tito_3VNP.pdb: (Unconserved sides chains are recalculated) : Sequence: align-3VNP-query.scw PDB file : Tito_Scwrl_3VNP.pdb: