Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPSVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVE--I-TEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
1J6W Chain:A ((3-152))--LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNG-DSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIG-------


General information:
TITO was launched using:
RESULT:

Template: 1J6W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 643 -72916 -113.40 -496.03
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : -113.40
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.539

(partial model without unconserved sides chains):
PDB file : Tito_1J6W.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1J6W-query.scw
PDB file : Tito_Scwrl_1J6W.pdb: