Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTHIYKKLGAAFFALLLIAALAACGNNSESKGSASDSKGAETFTYKAENG-NVKIPKHPKRVVVMADGYYGYFKTLGINVVGAPENVFKNPYYKGKTNGVENIGDGTSVEKVIDLNPDLIIVWTTQGADIKKLEKIAPTVAVKYDKLDNIEQLKEFAKMTGTEDKAEKWLAKWDKKVAAAKTKIKKAVG-DKTISIMQTNGKDIYVFGKDFGRGGSIIYKDLGLQATKLTKEKAIDQGPGYTSISLEKLPDFAGDYIFAGPWQSGGDDGGVFESSIWKNLNAVKNGHVYKMDPIGFYFTDPISLEGQLEFITESLTK
4FNA Chain:C ((7-277))----------------------------------------ETKSYKMDDGKTVDIPKDPKRIAVVAPTYAGGLKKLGANIVAVNQQVDQSKVLKDKFKGVTKIGDG-DVEKVAKEKPDLIIVYSTD-KDIKKYQKVAPTVVVDYNKHKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQ--PEQQKLTAKAGWAEVKQEEIEKYAGDYIVST--SEGKPTPGYESTNMWKNLKATKEGHIVKVDAGTYWYNDPYTLDFMRKDLKEKLIK


General information:
TITO was launched using:
RESULT:

Template: 4FNA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1387 98726 71.18 367.01
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain C : 0.79

3D Compatibility (PKB) : 71.18
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.566

(partial model without unconserved sides chains):
PDB file : Tito_4FNA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4FNA-query.scw
PDB file : Tito_Scwrl_4FNA.pdb: