Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MNRNQAIIASLCYFSVFIAPIIVPIV----------AYFVVNEKETKRHAIRSLISHIVPFVGWL--------FLFIALLGGAVAIDGDSLLPV---FVIIGGAVIYFL-----VVIGIIIWNVIQGIKVLRAA
4CHD Chain:A ((547-681))DPFSRAKSLLKSTILHAERCKEFVGNMLEEYQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLRE-


General information:
TITO was launched using:
RESULT:

Template: 4CHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 414 -27037 -65.31 -252.68
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -65.31
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.255

(partial model without unconserved sides chains):
PDB file : Tito_4CHD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4CHD-query.scw
PDB file : Tito_Scwrl_4CHD.pdb: