Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQTAWAPRTSGIAGCGAGGVVMAIASVTLVTDTPGRVLTGVAALGLILFASATWRARPRLAITPDGLAIRGWFRTQLLRHSNIKIIRIDEFRRYGRLVRLLEIETVSGGLLILSRWDLGTDPVEVLDALTAAGYAGRGQR
2PFU Chain:A ((43-141))
------MDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEG-------------------KKDTTIFFRADKTVDYETLMKVMDTLHQAG----YLKIGLVGEE-------------TAKAK
General information:
TITO was launched using:
RESULT:
Template:
2PFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18947 for 504 contacts (-37.6/contact) +
2D Compatibility (PS) -10602 + (NN) -5188 + (LL) 4048
1D Compatibility (HY) -400 + (ID) 500
Total energy: -31589.0 ( -62.68 by residue)
QMean score : -0.037
(partial model without unconserved sides chains):
PDB file :
Tito_2PFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PFU-query.scw
PDB file :
Tito_Scwrl_2PFU.pdb
: