Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
4ADV Chain:R ((19-73))
----------------------------EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH-
General information:
TITO was launched using:
RESULT:
Template:
4ADV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12843 for 328 contacts (-39.2/contact) +
2D Compatibility (PS) -5510 + (NN) 1509 + (LL) 1840
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -19554.0 ( -59.62 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_4ADV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADV-query.scw
PDB file :
Tito_Scwrl_4ADV.pdb
: