Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQL--RHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR
1V8P Chain:A ((27-150))
AVEYLVDASALYALAAHYDKWI-K---H--REKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSS-FKVLE--DPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVET--
General information:
TITO was launched using:
RESULT:
Template:
1V8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53702 for 919 contacts (-58.4/contact) +
2D Compatibility (PS) -13392 + (NN) -7412 + (LL) 1060
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -77546.0 ( -84.38 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_1V8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8P-query.scw
PDB file :
Tito_Scwrl_1V8P.pdb
: